PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00089g00842.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 513aa    MW: 57846.3 Da    PI: 5.5078
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00089g00842.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.93.1e-12180201526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                C+++++tG Ck+G++CkF+H+
  Peaxi162Scf00089g00842.1 180 DCSYYMKTGMCKFGPNCKFNHP 201
                               7********************8 PP

2zf-CCCH28.92e-09225249327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               + +C++++ +G CkyG  Ck++Hg+
  Peaxi162Scf00089g00842.1 225 QIECKYYLTSGGCKYGKACKYNHGR 249
                               568********************96 PP

3zf-CCCH40.83.5e-13270294226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               ++++C++++rtG CkyG++C+F+H+
  Peaxi162Scf00089g00842.1 270 GEKECPYYMRTGSCKYGSNCRFHHP 294
                               7899********************9 PP

4zf-CCCH27.55.5e-09406432127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C+ff +tG Cky ++CkF+H++
  Peaxi162Scf00089g00842.1 406 PGQPDCSFFIKTGDCKYKSNCKFHHPK 432
                               5789*********************96 PP

5zf-CCCH36.11.1e-11455479327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               +  C+f++r+G+Ck+G+ CkF H++
  Peaxi162Scf00089g00842.1 455 QTVCSFYSRYGICKFGPACKFDHPE 479
                               678********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.14175203IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6175202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6176202IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-9180201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-5181200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53222250IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4222249IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-7226249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5227251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5228250IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7268295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624268296IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-11270294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7270295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5274293IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-4405432IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145405433IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5407432IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5410433IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6452479IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131452480IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5453480IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9455479IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4457479IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MEQSIEQHQQ IQIQSSEDHH IEQLVFDSKT SSLQSDPNSQ NPNQNPPKSD ENDHDTDEMA  60
MQIIGDELRN LVLNQALNEE KEKEDLYHLD HEENGKRLEN EVEIVSWNDE EPGNVGEYGY  120
DHYDDQDENR SGSGNGNENE NENDGEKENG YGGDSKEGGY NGNNRIKRKY SYPLRPDAQD  180
CSYYMKTGMC KFGPNCKFNH PSRRKIQGPK EKGKQKEESQ ERPGQIECKY YLTSGGCKYG  240
KACKYNHGRE KGSISPIVEF NFLGLPIRPG EKECPYYMRT GSCKYGSNCR FHHPDPTTVA  300
GADPSSGYNN VGAVPVQAAS RPAASSWSSP RTLNDTASYV PMMYSPNQGM PSPNSEWNGY  360
QAPVYATSEN RLPTPPAFAM NNPTTRTNFY PRPQQPLLVE EYPERPGQPD CSFFIKTGDC  420
KYKSNCKFHH PKSSRISKGN SSILNDKGLP VRPDQTVCSF YSRYGICKFG PACKFDHPEN  480
YVGSASSTES GFDRPRESQM SLGWQGRELE VDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613172.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X3
RefseqXP_016508693.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X3
TrEMBLK4BK210.0K4BK21_SOLLC; Uncharacterized protein
STRINGSolyc03g111580.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-106C3H family protein